Well, the solution would be to find why that happens.
Because it's not only there. It's also on the checkout on the address selection screen where the use can edit/create addresses in a popup.
Basically, anywhere where a popup is used, it doesn't work on your front end because of apparently a conflict between both libraries.
What to do ?
1. Ask for help on the mootools / jquery forums. They might know what you could do to fix the problem.
2. Remove the javascript jquery files from your template (physically as well as the code loading them in the index.php). You don't seem to be using anything from it currently. It is used in your template to display some effects on sub menus but you don't have submenus.