Hi,
Note first that you mention that you have HikaShop 2.3.2 while when I checked your website, I saw that you have the 2.3.0 installed.
Well, your description of the problem correlates with your description of the solution.
If you use warehouses, you need to configure them in your products and in the variants and in the shipping methods.
With HikaShop 2.3.2, that we released yesterday, if you don't set the warehouse in the variants, the system will pick the warehouse of the main product instead so it might help, but really, just setting the warehouse everywhere you need it should be enough.
So if you think that you got everything setup properly, I would first recommend to update HikaShop. And if that doesn't help, I would ask you to provide a backend access to your website so that we can check your settings.